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Systematic Review Bot









    
  
    
  

  



















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000_systematic_review_bot_system_instructions.md






System instructions to build a systematic review bot

















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KB1_information_gathering.md






KB1: Collect desired search criteria

















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KB2_search_strategy_and_sources.md






KB2: Search strategies & available resources/tools

















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KB3_study_selection.md






KB3: Selection criteria

















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KB4_data_extraction.md






KB4: Extraction and table assembly

















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KB5_data_synthesis_and_reporting.md






KB5: Narrative synthesis

















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KB6_writing_style_requirements.md






KB6: Prompt for writing style

















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KB7_citations_and_reference_style.md






KB7: Assemble bibliography

















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KB8_pubmed_queries.md






KB8: PubMed search strategy

















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KB9_openalex_queries.md






System instructions for conducting OpenAlex searches

















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prisma.md






PRISMA Systematic Reviews Checklist

















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pubmed_openapi_annotated.md






Annotated YAML to access PubMed API using OpenAPI

















Obtaining an NCBI API Key


    

  1. Navigate to NCBI (https://www.ncbi.nlm.nih.gov/).
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  1. If you don’t have an NCBI account, you will be prompted to create one. Options include Google, Microsoft, ORCiD, or through your institutional nexus.
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  1. Log in to your account.
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  1. Click on Account settings.
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  1. Create an API key.
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  1. NB: Treat this API key like a password and keep it secure.
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Building Systematic Review Bot


    

  1. Download the source files.
    

    Systematic Review Bot
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  2. On the ChatGPT home page, click GPTs in the left sidebar.
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  1. On the next page, click the Create button in the upper-right corner.
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  1. Select Configure.
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  1. Paste 000_systematic_review_bot_system_instructions.md into the Instructions field.
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  1. Upload the Knowledge Base files (KB1–KB9).
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  1. Click Create New Action.
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  1. Select Authentication.
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  1. Choose API Key and paste your NCBI API key into the field.
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  1. Paste pubmed_openapi_configuration.yaml into the Schema field. Next, click the Test button for each API call type to verify that the requests work correctly.
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  1. Example of successful test output for the esearchPubMed call.
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  1. Click Save, then test the Custom GPT in the preview chat to ensure everything is working correctly.
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Assembled Systematic Review Using Prism


Assembled Systematic Review